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課程名稱 |
生物資訊學之實用數據分析
Practical Data Analyses of Bioinformatics |
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開課學期 |
109-2 |
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授課對象 |
共同教育中心 全球農業科技與基因體科學碩士學位學程 |
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授課教師 |
伊藤剛 |
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課號 |
ATGS7800 |
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課程識別碼 |
H43EM7800 |
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班次 |
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學分 |
1.0 |
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全/半年 |
半年 |
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必/選修 |
選修 |
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上課時間 |
第13,14,15,16,17 週
星期六6,7,8(13:20~16:20) |
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上課地點 |
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備註 |
初選不開放。本課程以英語授課。密集課程。上課教室：鄭江樓505室
總人數上限：15人 |
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課程簡介影片 |
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核心能力關聯 |
本課程尚未建立核心能力關連 |
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課程大綱
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課程概述 |
This course provides an introduction to bioinformatics, covering basic sequence analyses and molecular evolutionary methods. Analyses of a large amount of DNA sequencing data play a pivotal role in the modern molecular biology. Online web services are used so that students can acquire basic knowledge of a wide range of bioinformatics approaches in an easy-to-understand manner.
A term paper is required to submit one week after the final class. |
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課程目標 |
The course aims to provide information about online resources for bioinformatics analyses. General data processing is explained in a plain manner through hands-on learning. Students will learn practical large-scale data analyses. |
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課程要求 |
Basic knowledge of molecular biology is required. No specialist knowledge of bioinformatics is needed. |
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預期每週課後學習時數 |
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Office Hours |
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指定閱讀 |
"Introduction to Bioinformatics 5th Edition" Arthur M. Lesk (Oxford University Press)
This book is recommended, but not essential for the course. |
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參考書目 |
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評量方式
(僅供參考) |
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週次 |
日期 |
單元主題 |
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Week 1 |
5/22(Sat.) 13:20~16:20 |
Introduction
Data retrieval: DNA and protein databases
Data retrieval: species-specific databases |
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Week 2 |
5/29(Sat.) 13:20~16:20 |
Sequence similarity search: homology 1
Sequence similarity search: homology 2
Sequence similarity search: motifs |
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Week 3 |
6/05(Sat.) 13:20~16:20 |
Genome sequence annotation: introduction
Genome sequence annotation: microbial genomes
Genome sequence annotation: MEGANTE |
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Week 4 |
6/12(Sat.) 13:20~16:20 |
Genome data visualization: IGV
NGS data analysis: Galaxy 1
NGS data analysis: Galaxy 2 |
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Week 5 |
6/19(Sat.) 13:20~16:20 |
Molecular evolution: introduction
Molecular evolution: phylogenetic tree reconstruction 1
Molecular evolution: phylogenetic tree reconstruction 2 |